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Abstract

Objective:

Theories of amygdala function are central to our understanding of psychiatric and neurodevelopmental disorders. However, limited knowledge of the molecular and cellular composition of the amygdala impedes translational research aimed at developing new treatments and interventions. The aim of this study was to characterize and compare the composition of amygdala cells to help bridge the gap between preclinical models and human psychiatric and neurodevelopmental disorders.

Methods:

Tissue was dissected from multiple amygdala subnuclei in both humans (N=3, male) and rhesus macaques (N=3, male). Single-nucleus RNA sequencing was performed to characterize the transcriptomes of individual nuclei.

Results:

The results reveal substantial heterogeneity between regions, even when restricted to inhibitory or excitatory neurons. Consistent with previous work, the data highlight the complexities of individual marker genes for uniquely targeting specific cell types. Cross-species analyses suggest that the rhesus monkey model is well-suited to understanding the human amygdala, but also identify limitations. For example, a cell cluster in the ventral lateral nucleus of the amygdala (vLa) is enriched in humans relative to rhesus macaques. Additionally, the data describe specific cell clusters with relative enrichment of disorder-related genes. These analyses point to the human-enriched vLa cell cluster as relevant to autism spectrum disorder, potentially highlighting a vulnerability to neurodevelopmental disorders that has emerged in recent primate evolution. Further, a cluster of cells expressing markers for intercalated cells is enriched for genes reported in human genome-wide association studies of neuroticism, anxiety disorders, and depressive disorders.

Conclusions:

Together, these findings shed light on the composition of the amygdala and identify specific cell types that can be prioritized in basic science research to better understand human psychopathology and guide the development of potential treatments.

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Information & Authors

Information

Published In

Go to American Journal of Psychiatry
Go to American Journal of Psychiatry
American Journal of Psychiatry
Pages: 1086 - 1102
PubMed: 39473267

History

Received: 31 July 2023
Revision received: 16 April 2024
Accepted: 29 May 2024
Published online: 30 October 2024
Published in print: December 01, 2024

Keywords

  1. Anxiety Disorders
  2. Depressive Disorders
  3. Neuroscience
  4. Genetics/Genomics
  5. Single-Cell

Authors

Details

Shawn Kamboj, B.S.
Department of Psychology (Kamboj, Fox), California National Primate Research Center (Kamboj, Bauman, Fox), and MIND Institute (Carlson, Ander, Hanson, Bauman, Schumann), University of California, Davis; Department of Psychiatry and Behavioral Sciences (Carlson, Hanson, Schumann), Department of Neurology (Ander), and Department of Physiology and Membrane Biology (Murray, Bauman), School of Medicine, University of California, Davis; Department of Neuroscience and Department of Psychiatry, School of Medicine and Dentistry, University of Rochester, Rochester, NY (Fudge).
Erin L. Carlson, M.Sc.
Department of Psychology (Kamboj, Fox), California National Primate Research Center (Kamboj, Bauman, Fox), and MIND Institute (Carlson, Ander, Hanson, Bauman, Schumann), University of California, Davis; Department of Psychiatry and Behavioral Sciences (Carlson, Hanson, Schumann), Department of Neurology (Ander), and Department of Physiology and Membrane Biology (Murray, Bauman), School of Medicine, University of California, Davis; Department of Neuroscience and Department of Psychiatry, School of Medicine and Dentistry, University of Rochester, Rochester, NY (Fudge).
Bradley P. Ander, Ph.D.
Department of Psychology (Kamboj, Fox), California National Primate Research Center (Kamboj, Bauman, Fox), and MIND Institute (Carlson, Ander, Hanson, Bauman, Schumann), University of California, Davis; Department of Psychiatry and Behavioral Sciences (Carlson, Hanson, Schumann), Department of Neurology (Ander), and Department of Physiology and Membrane Biology (Murray, Bauman), School of Medicine, University of California, Davis; Department of Neuroscience and Department of Psychiatry, School of Medicine and Dentistry, University of Rochester, Rochester, NY (Fudge).
Kari L. Hanson, Ph.D.
Department of Psychology (Kamboj, Fox), California National Primate Research Center (Kamboj, Bauman, Fox), and MIND Institute (Carlson, Ander, Hanson, Bauman, Schumann), University of California, Davis; Department of Psychiatry and Behavioral Sciences (Carlson, Hanson, Schumann), Department of Neurology (Ander), and Department of Physiology and Membrane Biology (Murray, Bauman), School of Medicine, University of California, Davis; Department of Neuroscience and Department of Psychiatry, School of Medicine and Dentistry, University of Rochester, Rochester, NY (Fudge).
Karl D. Murray, Ph.D.
Department of Psychology (Kamboj, Fox), California National Primate Research Center (Kamboj, Bauman, Fox), and MIND Institute (Carlson, Ander, Hanson, Bauman, Schumann), University of California, Davis; Department of Psychiatry and Behavioral Sciences (Carlson, Hanson, Schumann), Department of Neurology (Ander), and Department of Physiology and Membrane Biology (Murray, Bauman), School of Medicine, University of California, Davis; Department of Neuroscience and Department of Psychiatry, School of Medicine and Dentistry, University of Rochester, Rochester, NY (Fudge).
Julie L. Fudge, M.D.
Department of Psychology (Kamboj, Fox), California National Primate Research Center (Kamboj, Bauman, Fox), and MIND Institute (Carlson, Ander, Hanson, Bauman, Schumann), University of California, Davis; Department of Psychiatry and Behavioral Sciences (Carlson, Hanson, Schumann), Department of Neurology (Ander), and Department of Physiology and Membrane Biology (Murray, Bauman), School of Medicine, University of California, Davis; Department of Neuroscience and Department of Psychiatry, School of Medicine and Dentistry, University of Rochester, Rochester, NY (Fudge).
Melissa D. Bauman, Ph.D.
Department of Psychology (Kamboj, Fox), California National Primate Research Center (Kamboj, Bauman, Fox), and MIND Institute (Carlson, Ander, Hanson, Bauman, Schumann), University of California, Davis; Department of Psychiatry and Behavioral Sciences (Carlson, Hanson, Schumann), Department of Neurology (Ander), and Department of Physiology and Membrane Biology (Murray, Bauman), School of Medicine, University of California, Davis; Department of Neuroscience and Department of Psychiatry, School of Medicine and Dentistry, University of Rochester, Rochester, NY (Fudge).
Cynthia M. Schumann, Ph.D. [email protected]
Department of Psychology (Kamboj, Fox), California National Primate Research Center (Kamboj, Bauman, Fox), and MIND Institute (Carlson, Ander, Hanson, Bauman, Schumann), University of California, Davis; Department of Psychiatry and Behavioral Sciences (Carlson, Hanson, Schumann), Department of Neurology (Ander), and Department of Physiology and Membrane Biology (Murray, Bauman), School of Medicine, University of California, Davis; Department of Neuroscience and Department of Psychiatry, School of Medicine and Dentistry, University of Rochester, Rochester, NY (Fudge).
Andrew S. Fox, Ph.D. [email protected]
Department of Psychology (Kamboj, Fox), California National Primate Research Center (Kamboj, Bauman, Fox), and MIND Institute (Carlson, Ander, Hanson, Bauman, Schumann), University of California, Davis; Department of Psychiatry and Behavioral Sciences (Carlson, Hanson, Schumann), Department of Neurology (Ander), and Department of Physiology and Membrane Biology (Murray, Bauman), School of Medicine, University of California, Davis; Department of Neuroscience and Department of Psychiatry, School of Medicine and Dentistry, University of Rochester, Rochester, NY (Fudge).

Notes

Send correspondence to Dr. Fox ([email protected]) and Dr. Schumann ([email protected]).

Competing Interests

The authors report no financial relationships with commercial interests.

Funding Information

Development of the animal model was supported by a grant from the Simons Foundation to the late Dr. Paul Patterson (SFARI 9900060). This research was supported in part by NIMH grant R21MH119650 (to Drs. Schumann and Bauman), the UC Davis Conte Center (NIMH grant P50MH106438-6618), the California National Primate Research Center (NIH grant P51-OD011107, to Dr. Fox as core scientist), and the UC Davis MIND Institute Intellectual and Developmental Disabilities Research Center (National Institute of Child Health and Human Development grant P50HD103526).

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